Senior Bioinformatics Scientist Job at Pharmaceutical Company, South San Francisco, CA

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  • Pharmaceutical Company
  • South San Francisco, CA

Job Description

Role Overview

We are seeking a Bioinformatician II to develop and optimize bioinformatics pipelines and perform NGS data analysis in support of research programs. The ideal candidate is highly proficient in Python or R , experienced with NGS workflows , and comfortable collaborating with wet-lab and cross-functional teams.

Key Responsibilities

  • Develop and maintain pipelines for RNA-seq, WGS/WES, scRNA-seq
  • Perform NGS analyses (variant calling, differential expression, QC)
  • Write reproducible code in Python or R
  • Collaborate with scientists and present analysis results

Required Qualifications

  • Master’s degree in Bioinformatics, Computational Biology, Genomics, or related field
  • 5–10 years of hands-on bioinformatics experience
  • Strong experience with NGS data analysis
  • Proficiency with tools such as STAR, BWA, GATK, DESeq2, Seurat
  • Experience with Git/GitHub

Preferred

  • Workflow tools ( Nextflow, Snakemake )
  • Cloud/HPC experience
  • Single-cell or long-read sequencing exposure

Job Tags

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